Category Archives: Salmon

Salmon virus spin

The science of monitoring west coast salmon populations for infectious salmon anemia is getting drowned out by spin and counterspin in Canadian and U.S. media. As an example of what Alexandra Morton calls a “cover-up”, compare the following pieces — both from Dec 6, 2011 — from the L.A. Times blog and Food Safety News.

Did Canada cover up deadly salmon virus? Report suggests yes

No ISA Found in BC Pacific Waters, Canada Says

With luck, clarity will emerge from the special sessions of the Cohen Inquiry scheduled for December 15, 16, & 19.  In the mean time, it would be great to know what exactly is being done by Cantwell and U.S. scientists about conducting independent testing of the salmon in U.S. waters…

Condit dam removal video and fact archive

This is an excellent overview of the Condit Dam history with a focus on salmon recovery and preparations for the removal (from the dam owner PacifiCorp by Narrative Lab).

One interesting point made in the video is that the reservoir was expected to drain in 6 hours (it drained in only 1 hour). And here are some quotes that have implications for how the recovery of the Elwha Chinook…

“Most of these fish are 25, 30 — we moved a 45 pound fish…. Tule fall Chinook are also known as White Salmon. They’re big because they had to move big cobble and big gravel.”

Perhaps we should be considering stocking the Elwha with such monsters instead of hoping the scarce or extinct spring run is replaced slowly by the hatchery-maintained fall run?

This coverage by Sally Showman of KOINLOCAL6 does a nice job of adding sound to the PacifiCorp and American Rivers breach footage, and also captures the wide range of emotional responses from local people.

And some nice footage of the rapid erosion of the reservoir sediments from Josh Epstein:

And time lapse videos by the University of Montana geomorphology lab and the USGS:

Other recent press:

http://www.columbian.com/news/2011/oct/27/condit-dam-projections-reality-studied-following-b/

Connecting the Fraser salmon virus dots

Are the Fraser chinook that southern resident killer whales love to eat already infected by the Infectious Salmon Anemia virus (ISAV) just detected in 2 Fraser sockeye smolts?  Could this virus — not salmon leukemia — be what caused the the mortality-related genomic signature in Fraser sockeye reported earlier this year?

Remember that DFO scientist Miller-Saunders told Scientific American last spring that “there is some indication that the signature may be in Chinook and coho” salmon, too.  To what data was she referring, I wonder?  Was it derived from out-migrating smolts or returning adults, wild or hatchery fish?  Was she referring to Fraser Chinook and coho, or some other stocks?

In contemplating how ISAV may affect the Northeast Pacific ecosystem, the Final Recovery Plan for U.S. Atlantic Salmon (Gulf of Maine DSP, 2005) is truly frightening reading.  The section on ISAV (appended below) suggests: that the virus can kill 3-50% of each production cycle and can infect non-Atlantic salmon (coho salmon in Chilean pens), as well as non-salmonids like rainbow trout (cultured) and gadids (potentially our pollack and cod species!); that rainbow and brown trout can be asymptomatic vectors; and that wild Atlantic salmon have been infected.  The plan also notes that “sea lice have been shown to retain the ISA virus after feeding on infected salmon.”  That’s pretty troubling when juxtaposed with recent research on lice infestation of wild B.C. salmon

The outlook for the Salish Sea ecosystem (and particularly it’s endangered salmon stocks) looks even dimmer after perusing an article about experimental infection of herring with ISAV.  The take home message (from the abstract): “It is concluded that the ISA virus is able to propagate in herring and that the herring may be an asymptomatic carrier of the virus.”

It’s going to be fascinating (and probably depressing) to see whether a pandemic develops.  If it does, the long-term outlook for southern resident killer whales may be bleak, especially if DFO fails to act at least as quickly and rigorously with the salmon farming industry as the U.S. agencies did when attempting to control the initial outbreaks in Maine.

Excerpt from the Final Recovery Plan for U.S. Atlantic Salmon (Gulf of Maine DSP, 2005) starting on page 1-60 —

ISA is a contagious and untreatable viral disease that affects a fish’s kidneys and circulatory system with a variable mortality rate from 3% to more than 50% in one production cycle (USDA APHIS 2001). Atlantic salmon infected with clinical ISA are anemic, typically lethargic, swim near the surface and fail to swim upright. Experimental studies have demonstrated that the virus is transmissible through mucous, feces and blood of infected/diseased fishes (Nylund et al., 1994). This results in cultured fishes being particularly susceptible to exposure to ISAV by infected cagemates. Studies in Norway indicate that penned salmon populations held within five kilometers (km) of each other or the discharge of slaughter wastes are at greatest risk of contracting ISA (Jarp and Karlsen, 1997). There is no evidence that the virus spreads vertically (from parents to offspring) although poor disinfection of fertilized eggs may allow for external transfer of the virus. Poor culture practices in fish hatcheries and net-pens in an Atlantic salmon watershed could increase the risk of a wild population’s exposure to disease.

ISA is the most significant known disease threat to the DPS. The threat of ISA to the recovery of the DPS is both direct, through infection of wild fish, and indirect by compromising hatchery supplementation of the DPS. The infection of emigrating smolts or adults passing near infected net-pens may cause mortality. This risk is greatest in those rivers whose approaches are nearest the highest concentration of net-pens, specifically the Dennys, East Machias and Machias. Other DPS river populations may also be at risk if they migrate through areas where aquaculture facilities are concentrated.

ISA has the potential to compromise CBNFH and the GLNFH if ISA-infected fish are inadvertently brought into one of these facilities. For example, an ISA-infected salmon brought into CBNFH for broodstock purposes could potentially infect other fish at the facility. In fact in 2001, a Penobscot sea run salmon brought to CBNFH for use as broodstock initially tested positive for ISA. Subsequent tests were negative and no additional fish were found to be infected. Outbreaks of ISA in freshwater hatcheries have not been reported from major salmon producing countries that have experienced ISA outbreaks. Still the potential for juveniles that have never entered salt water to be carriers of the virus is currently unknown.

ISA has already had an impact on Atlantic salmon recovery efforts. An adult stocking experiment (see page 4-69) was not fully optimized due to ISA concerns. These concerns resulted in more than 50% of the net-pen reared broodstock being destroyed. This decision was made because fish health experts felt the close proximity of these fish to fish infected with the ISA virus (ISAV) in commercial aquaculture pens was a substantial risk to wild populations. This concern was later affirmed by the outbreak of ISA in marine pens in the Cobscook Bay region (see page 1-82).

ISA was first reported in Norway in 1984 (Thorud and Djupvik 1988). In more recent years, cases of the disease have been reported from eastern Canada (Mullins et al. 1998), Scotland (Rodger et al. 1998), the Faroe Islands (OIE 2000), and in Cobscook Bay, Maine (Bouchard et al. 2001). The virus has also been associated with disease in cultured coho salmon in Chile (Kibenge et al. 2001) and very recently has been detected in cultured rainbow trout in Ireland.

The ISA virus has been known to cause disease in cultured fishes, principally in Atlantic salmon, although other species may act as carriers of the virus without signs of the disease. Species other than Atlantic salmon can become infected with ISAV and must be considered in the epizootiology of outbreaks and management of ISA. In laboratory studies, brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) have been shown to be asymptomatic carriers of the ISA virus that can transmit the virus to salmon by co-habitation (Nylund and Jakobsen 1995; Nylund et al. 1995; Nylund et al. 1997). Escaped or caged rainbow trout may pose a threat to wild Atlantic salmon by serving as a reservoir of ISAV.

Recent studies in the United States and Canada indicate non-salmonids (i.e., gadids) can become infected with ISAV. Whether these species act as reservoirs in wild populations remains to be determined. Assays of non-salmonid fishes taken from pens containing ISA-diseased cultured Atlantic salmon resulted in isolation of virus from tissues of asymptomatic cod (MacLean et al. 2003).

Results of recent studies conducted in Scotland and Canada indicate that ISAV exists at a low level in wild salmonids. ISAV has been found in Atlantic salmon aquaculture escapees (Olivier 2002; Raynard et al. 2001). There has been one case of wild salmon exhibiting ISA in Canada, but these wild fish were confined in a trapping facility with infected salmon of aquaculture origin.

At the time of the listing of the DPS as endangered in December 2000 (65 FR 69459), some U.S. net-pen sites in Cobscook Bay, the location of Maine’s greatest concentration of salmon aquaculture pens, were within five km of Canada’s ISA positive sites, raising concerns about the potential for this disease to infect U.S. aquaculture and wild salmon stocks. Subsequent to the listing of the Gulf of Maine DPS of Atlantic salmon as endangered, the disease spread to U.S. aquaculture sites within Cobscook Bay. The first known case of ISA in Maine occurred in Cobscook Bay at a salmon aquaculture net-pen site. The infection probably occurred in 2000 and was confirmed in February 2001. By September 2001, 50% of the net-pen sites in Cobscook Bay were ISAV-infected or diseased.

In January 2002, in an effort to control a catastrophic outbreak of ISA in Cobscook Bay, the Maine Department of Marine Resources (DMR), with the assistance of the U.S. Department of Agriculture’s Animal and Plant Health Inspection Service (USDA/APHIS), ordered the destruction of an estimated 1.5 million cultured salmon in the Bay. The industry was required to remove all fish from the Bay and a fallowing period, between sixty and ninety days, was imposed for the entire Bay in an attempt to eradicate the disease. The industry was also required to remove, clean and disinfect all the associated net-pens, barges and equipment at all the farms. The January 2002 order followed the voluntary removal by the aquaculture industry of nearly one million ISA- infected or exposed fish. In March 2002, ISA was also detected in an aquaculture facility in Passamaquoddy Bay. In response, the DMR issued an eradication order for the approximately 140,000 fish at the site.
In response to the ISA outbreak in Cobscook Bay, Maine DMR implemented new fish health regulations. The new DMR rules include mandatory surveillance and reporting of all test results for ISAV in salmon culture facilities. Sites with confirmed presence of ISAV are automatically subject to a remedial action plan developed by the DMR in cooperation with the salmon growing industry. Under the new regulations, the movement of vessels and equipment is also restricted. Prior to the rule changes, surveillance was not mandatory and reporting was only required when a case of the disease was confirmed.

The new rules require monthly sampling for all active finfish facilities in Cobscook Bay and quarterly testing for aquaculture facilities elsewhere in Maine. Reporting of results is mandatory and reports are provided to DMR. The DMR can require monthly testing for finfish facilities outside of Cobscook Bay if a positive case of ISAV is detected. The new rules expand DMR’s authority to take action at not only infected facilities, but also those exposed to ISAV. The rules require DMR to consult with all relevant state and federal entities with expertise in ISA control to keep ISA from spreading and prevent further outbreaks.

In response to the ISA outbreaks, the Maine DMR, with assistance of the USDA/APHIS also implemented an ISA control and indemnity program for farm-raised salmon in the U.S. The funds provided by the USDA were used to help the State of Maine with epidemiology and surveillance, and to indemnify the industry for their losses due to ISA. Under the DMR rule, all salmon growers in Maine must participate in the program. The goal of this program is to control and contain the disease through rapid detection and depopulation of salmon that have been infected with or exposed to the ISA virus.

In Spring 2002, Maine DMR authorized the restocking of Cobscook Bay. The Bay had lain fallow since January 2002. This authorization followed USDA approval of the cleaning and disinfection of equipment and the fallowing period. Subsequent to approval, the aquaculture industry stocked 1.9 million smolts on seven farms in Cobscook Bay. The number of smolts stocked was 30% lower than the amount historically stocked in this area (DMR 2002). New husbandry standards have also been put in place as part of the ISA control program. These new standards are administered by DMR.

The ISA control program initially divided Cobscook Bay into two management areas, a southern and a northern zone. The southern zone was stocked in even years beginning in Spring 2002. The northern zone was stocked only in odd years, beginning in Spring 2003. Recently, USDA and Maine DMR have determined that the entire Cobscook Bay would be managed as a single area. DMR estimated that by there would be approximately 25% fewer fish in Cobscook Bay compared to previous levels. In addition, several conditions are required for each lot of smolts that are introduced into net-pens from freshwater hatcheries. All aquaculture facilities in Cobscook Bay are only permitted to raise a single-year class of fish. A minimum thirty-day fallowing period between production cycles is required. No more than 10% of the fish at a site may be carried over between production cycles and then only upon approval by DMR. This approval requires that no ISA is detected at the site during the production cycle, that general fish health is satisfactory, that fish are removed by September 1, and that there be a biweekly surveillance of the site by a fish health professional. Movement of fish between farms in the same zone requires a permit and verification that ISAV has not been detected at either site in the four weeks prior to movement. There will be no moving of fish between zones. In addition, farms, aquaculture vessels and processing plants are subject to routine third-party biosecurity audits. Despite these measures, additional cases of ISAV were detected at aquaculture sites in Cobscook Bay beginning in June 2003 and continuing in 2004.

The DMR’s bay management program was developed following an evaluation of other bay management and ISA control programs in Canada, Ireland, Scotland and Norway. These nations have developed control programs intended to prevent further outbreaks of the disease. The DMR plans to codify bay management husbandry standards in a rule and establish other bay management areas where finfish leases are located. Successful sea lice management and control is a necessary component of bay area management as sea lice have been shown to retain the ISA virus after feeding on infected salmon (Nylund et al. 1993).

During routine surveillance of all salmon culture sites in Maine, an apparently new strain of ISAV was detected in November 2003 at a site approximately 50 miles from Cobscook Bay. This was the first detection of ISAV at any site in Maine other than Cobscook Bay. The new strain did not cause disease in the cultured salmon and did not grow in the laboratory on various cell lines typically used in ISA isolation. Gene sequencing of this organism indicates it is more closely related to a Norwegian strain than the New Brunswick strain that has caused the mortalities in Cobscook Bay. Subsequently, this new strain has also been found in Cobscook Bay sites. Efforts are underway to sequence archived samples to determine the significance of the virus in the Cobscook Bay system.

One potential mode of disease transmission is through biological sampling conducted by various state and federal agencies in DPS rivers. The development and implementation of disinfection and biosecurity protocols reduces the risk of a pathogen being moved from one location to another (G. Russell Danner, IF&W fish pathologist, personal communication 2004). Disinfection and biosecurity protocols, where not already in place, should be developed and implemented for all research and sampling activities taking place in rivers within the DPS (see page 4-63).

Updates from NOAA on Elwha science

Yesterday Sarah Morely of NOAA/NWFSC Watershed Program, Fish Ecology Division gave a 40-minute synopsis of the “Elwha River Dam Removal – Past, Present, Future.”  My notes are appended and the NOAA site has an abstract with recommended references (also appended in case the link breaks).

A small (fall) Elwha chinook (dated Oct 4, 2010)

The most interesting aspect of the talk from the perspective of the southern resident killer whales is that no one in the audience, including Mike Ford, offered a clear articulation of the strategy for recovering the Elwha’s chinook salmon — and particularly the possibly extinct spring chinook of 50-kg fame.  Given their strong preference for big chinook (Hanson et al., 2010), the southern residents would presumably benefit most from the fast recovery of the biggest Elwha chinook, but Sarah only indicated that her impression was that the return of salmon to the Elwha was going to more “natural” than managed.  With large salmon and a combined species population potential of ~400,000 fish, we ought to be very clear as a community about the chinook recovery strategy!

That led one audience member to wonder whether the spring run is really extinct and, if so, how long it might take the fall chinook population to naturally fill the spring niche.  He asked whether 25 years might be a good guess for natural recovery of the spring chinook runs if adults are not moved above Glines Canyon dam to facilitate their re-colonization of the upper Elwha and tributaries (as is currently being done at Condit Dam on the White Salmon), but Sarah didn’t volunteer a confirmation or an alternative estimate.  The audience member’s suggestion of possible extinction is echoed on the National Park Service’s web page on the historic range of Elwha chinook:

Very few, if any, spring-run Chinook remain in the Elwha.

This made me realize that I (or some other southern resident stewards) need to dig into the EIS and figure out if the spring chinook are being managed in an optimal way from the perspective of the salmon-eating killer whales.  If they are not, then perhaps we should all make it a priority to change the situation.

In sleuthing around for details on the Elwha chinook runs, I did start to answer a different long-standing question: “Why were the Elwha chinook so big?”  I had heard 2 compelling hypotheses: (1) velocity and vertical barriers are more substantial on the Elwha than on comparable (Olympic) rivers and selected for fish powerful enough to surmount them; and, (2) stream bed gravel size in the Elwha is much larger than on comparable (Olympic) rivers and only bigger salmon could dig in it to build their redds.

The second is refuted by Sarah’s response to a question I asked her after her talk: How does the sediment size distribution in the upper Quinalt compare with that in the upper Elwha?  She said the upper (east?) fork of the Quinalt was chosen as a comparison site because the river bed sediment size distribution is similar to that in the upper Elwha.  Yet the Quinalt does not host gigantic chinook…  But perhaps it has bigger velocity and vertical barriers than the Elwha?

The first hypothesis is addressed in Brenkman et al., 2008 (special issue of Northwest Science).  They describe the velocity and vertical barriers on the Elwha:

The 7.9 km of main stem habitat currently available to anadromous salmonids in the Elwha River will increase to 71 km following dam removal. Possible seasonal velocity barriers exist in three main stem Elwha River canyons during periods of high river flows (Figure 2)—Rica (rkm 26.1 to rkm 27.3), Grand (rkm 31.1 to rkm 35.3), and Carlson Canyons (rkm 53.0 to rkm 54.5). Rica Canyon consists of bedrock, large boulders, and high-velocity water with several cascades and falls up to 1.8 m in height. The upstream portion of Grand Canyon contains several cascades and low waterfalls, and the lower 2.4 km of Grand Canyon contains approximately 15 cascades and falls. Carlson Canyon has a single waterfall that is 2 m in height (Washington Department of Fisheries 1971).
Seasonal velocity barriers in the Elwha River occur where the river channel is constrained by steep canyon walls and boulder- and bedrock- dominated substratum. Canyon reaches have channel gradients that are up to two times steeper (2% in Rica, Grand, and Carlson Canyons) than the average gradient for the entire 69 km of the main stem river (1%). High-flow events resulting from early winter storms and spring runoff create high-velocity cataracts that may constitute seasonal migration barriers to salmonids moving upstream. In contrast to these steep canyons, other sections of the Elwha River are much more gradual, with gradients of 0.3% from the mouth to Elwha Dam, 0.8% from Elwha Dam to Glines Canyon Dam, and 1.4% from Glines Canyon Dam to the headwaters of the main stem.

While salmon are generally capable of jumping 1.8-2m barriers, their ability to do so is limited by the pool size (particularly depth), relative position of the pool and the hydraulic jump, and degree of aeration in the pool.  I’ve yet to find these details, but if they don’t exist, I know what I’m doing on my next hike up the Elwha drainage!

MY NOTES ON THE TALK:

Sept 16 was beginning of deconstruction of dams. Deconstruction will take another 2-3 days. Salmon recovery is expected to take decades.

Background:

Global distribution of dams and reservoirs is extensive in termparate regions. Global Water System Project Database, 2011 (McGill University)

Poff & Hart, 2002, Bioscience: increased dam removal over last 30 (now 40?) years is due to replacement generally being more expensive than removal, BUT most removed dams have been small.

Imminent NW removals – Elwha, White Salmon, Sandy River, Marmot Dam on Little Sandy River, Rogue, Calapooia (Umpqua), Kalamat

Lower Elwha (190? 1913) and Glines dams (1932? 1927) reduced sediment, river movement, woody debris, as well as salmon populations. They will be removed concurrently in controlled increments over 2-3 years (to minimize impacts of sediment to fish as well as benthic organisms.

Link to web cam of sediment plume? (Bureau of Reclamation is managing erosion of 18 M m^3 of sediment, 50% fine, 30% coarse, suspended sediment concentrations of >10,000 ppm)

Monitoring efforts and objectives

Objectives: 1) Establish baselines (advanced) and 2) evaluate response to dam removal (just getting started)

Research areas: Former reservoirs, Nearshore (consortium of Fresh/Kagley/+), River ecosystem

Nearshore (slides from Kurt, but also USGS+ collaborators)

  • Monthly sampling (Mar-Sep) since 2006; 37m beach seine plus environmental data
  • Community composition doesn’t change much between years, but is a little different between their reference areas and the area expected to be impacted by sediments.

River ecosystem (Floodplain dynamics, aquatic foodwebs, fish recolonization [enumeration, distribution, predicted movements, genetic work])

Floodplain dynamics Pess, Beechie, LEKT, USGS, USFWS

  • Channel age, connectivity, distribution
  • Riparian vegetation diversity
  • Kloehn et al 2008, Influence of dams on river-floodplain dynamics in the Elwha River, Washington. Northwest Science 82.
  • Trout dominate surface water channels; Coho dominate in groundwater channels.
  • George snorkels to measure residual pool depth, pebble counts and spawnable area and fine sediment sampling.
  • 14 monitoring sites (7 below Elwha, 7 above Elwha; 2 mainstem, 2 tributaries, 10 floodplain)

Aquatic Foodwebs

  • Morley, Coe, LEKT, USGS
  • Nutrient Limitation, primary production, benthic invertebrate, marine derived nutrient transfer
  • Morley et al. 2008. Benthic invertebrate and periphyton in the Elwha River basin: current conditions and predicted response to dam removal. Northwest Science 82.
  • Duda et al., 2010. Isotope patterns.
  • River is nutrient limited in non-winter months by nitrogen and secondarily phosphorous
  • Elwha Fish Weir (species, sex, length, Tags (CWT, ?), scales, fin clip
  • Blue View (Keith Denton and 1 other) is helping with enumerating Coho when fish weir is non-functional in high flow periods.
  • Genetics of O. mykiss (resident rainbow and steelhead): see 3 gene pools or distinct populations: 3 native, 1 non-native (lower, resident, Trout Lake); no hatchery influence upstream of dams.
  • McMillan looking at resident rainbows vs anadromous steelhead metrics.
  • Kinsey Frick: Spawning movements of adult salmonids during dam removal. Catching fish in weir, tagging with radio tags, and releasing above
  • 20 chinook released above dam; relocated 3-4 that had found spawning habitat in lower Elwha while some returned to spawn below the dam. Plans to tag more chinook as well as other salmonids.

On-line resources

11:45 — QUESTION AND ANSWER SESSION:

  • Do you have plans to monitor hatchery stock status and impacts? At recent symposium, Norm Dicks mentioned that Chambers Creek (non-native steelhead) may be an issue, plus it is also focus of current law suit.
  • There used to be spring and fall chinook. The spring were the big ones and likely are extinct. Will spring chinook be brought in or are fall chinook expected to fill in that gap?
  • Me: How will chinook recovery be managed? Why was this approach taken, while more direct facilitation was done on White Salmon?
  • The Condit removal is supposed to take 3-5 days; why should the Elwha take so much longer?
Big Elwha salmon

Big Elwha salmon (from LEKT?)

Questions I didn’t ask:

  1. What is evidence of 100 lb chinook? Have all sources of evidence been pursued? (Middens? Interviews? Historic photographs? Written accounts? Inference from tree ring growth rate and/or isotope ratios?)  What is the source and story of the photo in your title slide (shown at right and credited to LEKT = Lower Elwha Klallum Tribe)?
  2. Are sediment size distributions similar in Quinalt to in the Elwha? Are such distributions governing invertebrate community structure?
  3. Why is recovery expected to take decades? (Urgency is lent by the SRKW’s need and preference for chinook.)

Follow research to do:

  • Frick re plans for upper Glines?
  • Is “out-planting” mentioned in the EIS?
  • Ask Eric Anderson how long fall chinook would take to fill niche of spring chinook.
  • Surely there are studies of how fast adaptation occurs from other removals or mitigation efforts?
  • How much sediment is behind Condit?

Clipping from the NWFSC talk announcement web site:

Elwha River Dam Removal: Past, Present, and Future

Date and Time: October 06, 2011, 11:00-12:00 Pacific Time Zone [Check U.S. Time clock for your local time]
Location: NOAA Northwest Fisheries Science Center (NWFSC) (2725 Montlake Boulevard East, Seattle, WA 98112; Map to NWFSC), Room: Auditorium.
Speaker(s): Sarah Morley (Research Ecologist, Watershed Program, Fish Ecology Division, NOAA NWFSC)
Speaker’s Email: sarah.morley@noaa.gov
OneNOAA Seminar Sponsor: NOAA NWFSC Monster Seminar JAM
Abstract: The removal of the Elwha River dams on the Olympic Peninsula of Washington State is a unique opportunity to examine ecosystem recovery on a watershed scale, and has spurred collaborative research efforts among divergent groups. For the past century, the two dams have blocked the upstream movement of anadromous fish to over 90% of the watershed, and restricted the downstream movement of sediment, wood, and other organic materials to the lower river and estuary. Populations of all five Pacific salmon species and steelhead in the Elwha are critically low, habitat complexity decreased in the middle and lower river, and downstream coastal habitats are sediment starved. Simultaneous deconstruction of the two dams began in September 2011 and will take three years to complete. During and after that time, researchers are examining dam removal effects in three geographic regions: the soon-to-be former reservoirs, across the river floodplain, and in the nearshore environment. Short-term (< 3 years post dam removal) monitoring is focused on the projected downstream transport of approximately four million cubic meters of fine sediments accumulated in the reservoir deltas, associated peaks in river and estuary turbidity levels, and re-vegetation of the reservoir themselves. Longer-term effects of dam removal (> 5 years) to be evaluated are the delivery of gravels and cobbles to the lower river and nearshore, the re-establishment of a natural wood delivery regime, the re-colonization of the upper watershed by anadromous fish, and the associated effects on aquatic and riparian foodwebs. This talk will provide an overview of the Elwha restoration project, but particularly highlight the research of NWFSC researchers examining river floodplain dynamics, salmon re-colonization, and aquatic foodwebs. The removal of the Elwha Dams has been long awaited by the Lower Elwha Klallam Tribe and others and will provide ongoing learning opportunities for future dam removal efforts across the United States and elsewhere.
About the Speaker: Sarah Morley is a field ecologist whose research focuses on biological assessment-using biota to evaluate the condition of a place and better identify the causes of degradation. Within this broad framework, she has conducted research on the effects of urbanization on the health of Puget Sound streams and evaluated the effectiveness of restoration actions on streams and rivers across the Pacific Northwest. Recent projects include examining the effects of shoreline armoring on the biota of the Duwamish River estuary, the effectiveness of green stormwater management strategies in improving urban stream health, and aquatic foodweb effects of dam removal on the Elwha River. Sarah holds a B.S. in Environmental Science from U.C. Berkeley and an M.S. in Aquatic and Fisheries Sciences from the University of Washington. She has been a member of the Watershed Program at the Northwest Fisheries Science Center since 2000. http://www.nwfsc.noaa.gov/research/staff/display_staffprofile.cfm?staffid=649

Salient Publications

  • Duda, J. J., H. Coe, S. A. Morley, K. Kloehn. 2011. Establishing Spatial Trends in Water Chemistry and Stable Isotopes (d15N and d13C) in the Elwha River Prior to Dam Removal: A Foodweb Perspective. River Research and Applications. doi:10.1002/rra.1413
  • Kloehn, K.K., T.J. Beechie, S.A. Morley, H.J. Coe, and J.J. Duda. 2008. Influence of dams on river-floodplain dynamics in the Elwha River, Washington. Northwest Science 82: 224-235.
  • Morley, S.A., J.J. Duda, H.J. Coe, K.K. Kloehn, and M.L. McHenry. 2008. Benthic Invertebrates and Periphyton in the Elwha River Basin: Current Conditions and Predicted Response to Dam Removal. Northwest Science 82:179-196.
  • Morley, S. A., P. S. Garcia, T. R. Bennett, P. Roni. 2005. Juvenile salmonid (Oncorhynchus spp.) use of constructed and natural side channels in Pacific Northwest Rivers. Canadian Journal of Fisheries and Aquatic Sciences, 62:2811-2821.
  • Pess, G. R., S. A. Morley, J. L. Hall, R. K. Timm. 2005. Monitoring floodplain restoration. Pages 127-166 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.

The Elwha recovery as environmental hope

Indian Country Today has provided an excellent archive of words spoken at the Elwha dam removal ceremony (9/17/11) by Bill Bradley, former Senator from New Jersey and past Presidential candidate.  Part I provides insightful details into the decades of political machinations in D.C.  Part II captures the amazing precedent the process sets for how to solve comparable, complicated environmental problems.  Perhaps most importantly, Bill gives us orca-advocates a long list of good people to thank.

Here’s the best quote (from the end):

The reflection you see in Elwha is an image of what our country is capable of. Not only in the past. But tomorrow. And years from now. For our children, grandchildren and great grandchildren. When they are calling the shots, deciding whether and how to work with each other, and defining the public interest. Here, in the success of our collective action for the Elwha, is a template for success on climate change, energy policy, oceans conservation, species protection, and the hundreds of other issues.

Right now, when it’s just us and a river waiting for the dams to come down, it may be difficult to conceive of the inspirational power of what you have done. But when the salmon return, when the dippers and the herons and beavers and the bears crowd the banks, when the life of the ocean and the mountains are joined again, when justice is done for native people, you will have here something that moves lives and inspires people thousands of miles and continents away from here. It will be compelling, empirical proof of the health and practical genius of our own democracy.

This will be the place where our children, grandchildren and great grandchildren can see the life of the planet restored. They will see the tangible power and great beauty of what you have achieved.

We are restoring honor. We are keeping promises. We are doing the right thing.

Your children, grandchildren, great grandchildren—they will be proud of you.

It will be the great gift of the Elwha—Hope.

 

Klamath River dam removal proposed

Things are really looking up for the salmon-eating killer whales of the west coast.  For the third time this fall, progress in removing dams on west coast salmon rivers has been made.  First there was press regarding the beginning of the removal of the Elwha dams.  Then news came of preparations for dam removals on the White Salmon (including this Yakima Herald story about trucking fall chinook above the dams).

Now coverage is emerging about the draft EIS/EIR regarding removal of 4 hydroelectric dams on the Kalamath River in California.  The document was made available on September 21 and is open for public comment for 60 days (until November 21).  Copco No. 1 (pictured in the AP photo below) is one of the dams that may be demolished.

Recent press, including a 9/27 piece in India Country Today Media Network and a 9/22 story in SFGate, contain potentially good news for endangered southern resident killer whales which spend some of their winter months hunting in along the west coast in the migratory path of adult Kalamath salmon.  If things don’t get bogged down at the Federal level, the proposed plan may be approved by the Secretary of the Interior as soon as March, 2012.

The India Country states:

Over the past century, the number of salmon in the run has dwindled from millions of fish to less than 100,000 in most years.

And when the dams are gone, fisheries are expected to double in size.

Notable quotes from SF Gate:

Dismantling the four hydroelectric dams on the Klamath River would open up 420 miles of habitat for migrating salmon…

The long-awaited environmental report on what would be the biggest dam-removal project in California history predicted an 81.4 percent increase in the number of chinook salmon and similar increases for steelhead trout and coho salmon.

The dams – Iron Gate, Copco 1, Copco 2 and J.C. Boyle – have blocked salmon migration along the California-Oregon border since the first one was built in 1909 and have been blamed for much of the historic decline of chinook and coho salmon and steelhead trout in the Klamath.

The ultimate goal is to restore what has historically been the third-largest source of salmon in the lower 48 states, behind the Columbia and Sacramento rivers.

 

 

 

Explosive Condit dam removal: more Columbia salmon on winter menu?

Kim Pokorny of the Oregonian reports progress on cleaning up the White Salmon River, a tributary on the lower Columbia, in preparation for an October 26 explosive removal.  This is good news for future foraging by southern resident killer whales who are known to target main stem Columbia fish when foraging on the Washington and Oregon coasts.

On Oct. 26, after years of wrangling among Washington’s Klickitat and Skamania counties and the environmental and tribal groups that teamed with dam operator PacifiCorp, a hole will be blown through the bottom of the dam and about 2.2 million cubic yards of sediment will pour through and rush three miles downriver to the confluence of the White Salmon and Columbia rivers.

It will be interesting to compare the sediment and fish dynamics between this dredging and explosive technique with the more progressive removal of the Elwha dams.  This is the fall of falling dams!  Hurrah!

Elwha dam removal begins this weekend

Here’s a great letter sent out today by Save Our Wild Salmon:

This Saturday, September 17th, marks a truly historic event for wild salmon and river communities: the largest river restoration project to date with the removal of the two Elwha River dams on Washington State’s Olympic Peninsula. Here are 3 great items to check out:

The Elwha Dam1) Today’s blog post from our executive director, Pat Ford, The Elwha Project: Lessons for the Lower Snake River.  Here’s an excerpt:

The Elwha project will offer lessons for the lower Snake River in many areas, but I’ll note three of importance — salmon response, economic impact, and collaboration:

  • Wild salmon have responded quickly and positively to every major dam removal done so far on a salmon river; quick adaptability is in their DNA.  The Elwha will provide the best lessons yet in how fast various species respond.  This is important for the lower Snake, where five species of salmon and steelhead will be affected.
  • Local economic benefit to Tribal and non-Tribal communities was not a primary motivator behind the Elwha campaign, but it has become a critical and closely watched feature of the project.  While the rural areas around the lower Snake have different dynamics from the communities near the Elwha, the importance of jobs is just as critical.
  • After much conflict over two decades, the Elwha project finally came together due to collaborations in which all parties got something important to their future.  No doubt a collaborative process for the lower Snake will look very different, but the same principles can be applied for the farmers, fishermen, energy users, communities, and businesses involved.

Elwha Video - Andy Maser2) VIDEO: Year of the River: Episode 1

An exciting new video was released this week about the Elwha project by Andy Maser courtesy of American Rivers and American Whitewater. Check it out here.

3) Watch the Dam Removal Ceremony LIVE.

The Elwha River Restoration and Dam Removal Ceremony Simulcast will begin on Saturday, September 17th at 11am pacific, 2pm eastern.

Find it here: http://www.celebrateelwha.com/ceremony

Stay tuned for more information as events unfold on the Elwha and elsewhere.  And thank you for your continued support.

-Joseph

Joseph Bogaard
Save Our Wild Salmon
joseph@wildsalmon.org
206.286.4455 x103
SOS Blog | Facebook | Twitter | YouTube
www.wildsalmon.org

Public and scientific influence in recovery of Columbia salmon for orcas

Great news last week from Save our Wild Salmon et al.: Judge Redden has again ruled that the Biological Opinion for managing Columbia Basin salmon is illegal and scientifically inadequate. This KPLU story on the timeline for revising or renewing the BiOp suggests that the Locke/Lubchenko team will probably not have time to react before the 2012 elections.  The Judge has allowed the current BiOp to guide management decisions through 2013.

Chris Dunagan’s synopsis (including a link to a PDF of the Judge’s opinion) references an OregonLive piece that quoted NOAA Regional Director Will Stelle implying that habitat restoration (not dam removal or more spill) will likely satisfy Redden’s concerns:

Will Stelle, NOAA’s Northwest regional director, said he thinks adding more detail to future habitat projects will satisfy the judge. Redden endorsed the plan through 2013, Stelle noted, and his conclusions about habitat were “totally understandable.”  “He ordered us to tighten up on the habitat program after 2013, and that’s fine,” Stelle said. “We were intending to do it anyway.”

So, it seems that local NOAA leadership is focused on saving salmon and orcas by restoring habitat in the Columbia basin while considering the needs of killer whales in the management of recreational and commercial fisheries.  Back in February, Stelle/NOAA proposed a series of workshops to assess the effect of salmon fisheries on (southern resident) killer whales.  The second workshop is due to occur about now: “Workshop 2 (~ 2 days) would occur in late summer or autumn of 2011.”  Does anyone have any news about the first workshop or a particular date for the second?

At the Federal level, NOAA leadership on salmon management has been profoundly disappointing.  I would love to understand how Secretary of Commerce Gary Locke (past WA Governor) and NOAA Director Jane Lubchenko (an established marine ecologist from OSU) managed to squander such a rare opportunity to derive a progressive plan and begin implementing it during their 4 years with Obama.  If the Democrats lose in 2012, Gary and Jane should be remembered most for failing the salmon, killer whales, and conservationists of the Pacific Northwest.

How did Gary and Jane fail the King of Fish?  Does anyone have any insights into the politics behind their actions?  Were the WA Senators influencing the process to retain votes in Eastern Washington?  If so, how did they motivate the appointed leaders within the Department of Commerce?

Another question is whether it is worth organizing now (as killer whale and salmon conservationists) to motivate Lubchenko to create a new BiOp that is fully based in science and politically progressive.  Perhaps it would be strategic to motivate them to create a plan in the next year so that it is in place before the 2012 elections and the potential changes in leadership that will occur as 2013 starts?  If the Democrats win and Gary/Jane are retained by Barak, then how GREAT would it be if they had a new and innovative BiOp ready for implementation on the first day of 2014 — halfway through their second term — or even sooner?

In any case, we should lobby for much greater transparency in the derivation of a new BiOp, or the revision of the old BiOps.  In preparation, we need to understand how the previous processes were NOT transparent.  Some history, insightful questions, and observations arose during the KUOW Weekday discussion about Salmon and Snake River Dams July 5, 2011:

Steven Hawley (journalist) — Has the process by which the Federal agencies (including the BPA) have made public policy been transparent (enough)?

  1. 2005 — Judge remanded Bush-era plan back to Federal agencies (he had rejected Clinton plan in 2000)
  2. 2005 — BPA Utilities and Senator Craig tried to cut funding for Fish Passage Center (that had published data showing more water is good for fish)
  3. 2006 — Concern about fish passage model led to scientists being pulled from a panel
  4. 2007 — BPA violated court-ordered spill program…

How can the public influence the plan and vision for the Columbia River Basin and its management (as opposed to scientists and the Federal government)?

Were scientists consulting (for a 2009 science meeting related to the Biop) required to sign confidentiality agreements (within their contracts)?

How has the National Academy of Scientists been in involved?  What overlap — if any — was there between NAS members and consulting scientists?

William Rogers is happy about the returns.  What are the recent trends?  GRAPH?

Hawley: Should we be measuring success in some way other than standard of 93-96% survival PER DAM of migrating juveniles and adults?  The cumulative (downstream?) impact of the hydropower system is to reduce runs by ~50%.

Lorri Bodi (BPA): “In 2011 our spring chinook run (wild and hatchery) was the fifth highest since 1938.  In 2011 the summer chinook run (wild and hatchery) is expected to be the biggest in 30 years.”

Big fall chinook run expected on Columbia

Today’s Weekender Report from WDFW suggests SRKWs could have some good eating off the mouth of the Columbia this fall.  Does anyone have a read on how the Fraser chinook runs are faring this summer?  Why don’t killer whale conservationists have an easy way of monitoring the abundance of northwest salmon?

Anglers are reeling in chinook salmon off the coast, pulling up pots full of crab in Puget Sound, and casting for trout in alpine lakes on both sides of the Cascades.  Summer fisheries are in full swing, and anglers can look forward to even more great fishing opportunities in the days ahead.

A prime example is the Buoy 10 salmon fishery, which runs Aug. 1-28 at the mouth of the Columbia River. A big run of 776,300 fall chinook is expected to return to the big river this year, and fishery managers predict that anglers will catch approximately 11,000 of them between Buoy 10 and Rocky Point, 16 miles upriver.

“Buoy 10 is a very popular fishery, drawing tens of thousands of anglers every year,” said Joe Hymer, a fish biologist for the Washington Department of Fish and Wildlife (WDFW).  “Fishing tends to start out slow, then accelerates quickly through the month of August.”